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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
203
DNA binding
24
Transcription
4
DNA accessibility
Target of assay
175
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
28
May, 2019
October, 2017
13
July, 2019
12
February, 2020
2
March, 2020
1
February, 2023
Available data
234
bam
215
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
104
tagAlign
44
bed broadPeak
38
bigBed broadPeak
bed bed3+
26
tsv
11
fastq
3
hdf5
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
233
Homo sapiens
Biosample type
221
tissue
12
primary cell
Organ
906
pancreas
775
liver
653
connective tissue
497
epithelium
482
adipose tissue
355
heart
272
kidney
233
brain
221
vasculature
218
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
58
musculature of body
56
eye
41
nerve
34
embryo
21
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
233
AMP
Genome assembly (visualization)
178
GRCh38
131
hg19
Lab
233
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
bed bed3+
bed bedMethyl
month_released!
October, 2017
BIOSAMPLE
ASSAY
233 results
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ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
angular gyrus
15
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
cerebellar granule cell
2
Purkinje cell
1
See all biosamples
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