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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
7
WGBS
4
single cell RNA-seq
1
FAIRE-seq
Assay category
101
DNA binding
7
DNA methylation
4
Transcription
1
DNA accessibility
Target of assay
68
transcription factor
25
RNA binding protein
19
histone
19
histone modification
16
recombinant protein
14
control
11
narrow histone mark
8
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
709
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
199
May, 2022
198
February, 2023
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
308
bam
293
bigWig
283
bed narrowPeak
283
bigBed narrowPeak
bed bed3+
196
bed broadPeak
196
bigBed broadPeak
91
fastq
7
bed bedMethyl
7
bigBed bedMethyl
3
tsv
1
csv
Organism
113
Homo sapiens
Biosample type
61
cell line
35
primary cell
17
tissue
Organ
50
liver
15
blood
15
bodily fluid
12
connective tissue
10
musculature of body
8
spleen
7
epithelium
6
pancreas
5
heart
3
eye
3
kidney
Project
113
AMP
Genome assembly (visualization)
96
GRCh38
88
hg19
Lab
113
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bed3+
bed bedgraph
BIOSAMPLE
ASSAY
113 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
5
cardiac muscle cell
3
epithelial cell of proximal tubule
3
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tissue
spleen
6
2
liver
4
pancreas
2
1
body of pancreas
2
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