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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
76
total RNA-seq
15
ChIP-seq
12
ATAC-seq
1
GRO-seq
1
pCHi-C
Assay category
76
Transcription
15
DNA binding
12
DNA accessibility
Target of assay
8
histone
8
histone modification
5
narrow histone mark
4
control
3
broad histone mark
3
transcription factor
Date released
150
February, 2021
13
February, 2018
8
August, 2021
8
February, 2023
6
December, 2017
3
May, 2021
1
January, 2018
Available data
98
bam
88
txt
85
bigWig
72
tsv
23
fastq
20
bed narrowPeak
4
bed bed3
bed bed3+
Organism
189
Homo sapiens
Biosample type
158
tissue
22
in vitro differentiated cells
8
cell line
1
primary cell
Organ
916
pancreas
778
liver
657
connective tissue
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
188
AMP
1
T1D
Genome assembly (visualization)
94
hg19
90
GRCh38
1
hg18
Lab
188
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
bed bed3+
bedpe
organ_slims!
epithelium
BIOSAMPLE
ASSAY
189 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
in vitro differentiated cells
pancreatic endoderm
4
15
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
megakaryocyte
1
See all biosamples
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