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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
45
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
45
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
control
20
broad histone mark
13
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
47
August, 2017
12
July, 2019
5
October, 2018
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bigWig
423
bam
401
tsv
25
fastq
13
bed narrowPeak
10
bigBed narrowPeak
7
tagAlign
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
bedpe bed3+
Organism
459
Homo sapiens
Biosample type
458
tissue
2
primary cell
Organ
755
pancreas
629
liver
622
connective tissue
460
adipose tissue
388
epithelium
340
heart
264
kidney
220
brain
199
vasculature
196
blood vessel
159
bone element
128
artery
69
limb
63
blood
63
bodily fluid
56
eye
53
musculature of body
30
nerve
28
embryo
20
lung
17
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
460
AMP
Genome assembly (visualization)
420
hg19
418
GRCh38
Lab
460
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
8
missing controlled_by
files.file_type!
bed bed3+
bedpe bed3+
month_released!
May, 2022
target.investigated_as!
control
BIOSAMPLE
ASSAY
460 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
31
3
subcutaneous adipose tissue
7
2
1
1
1
omental fat pad
5
3
1
1
white adipose tissue
8
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
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