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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
6
Hi-C
6
total RNA-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
2
small RNA-seq
1
single cell RNA-seq
Assay category
59
DNA binding
9
Transcription
6
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
39
histone
39
histone modification
24
broad histone mark
15
narrow histone mark
14
control
6
transcription factor
3
other context
3
other post-translational modification
Date released
24
August, 2017
10
June, 2019
8
July, 2019
7
December, 2018
7
January, 2019
7
May, 2019
6
March, 2020
6
November, 2018
2
February, 2020
1
January, 2018
1
May, 2022
1
October, 2017
Available data
84
bigWig
81
bam
74
bed narrowPeak
60
bigBed narrowPeak
47
bed broadPeak
bed bed3+
34
bigBed broadPeak
26
fastq
15
tagAlign
10
tsv
6
bed bedMethyl
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
80
Homo sapiens
Biosample type
68
tissue
12
primary cell
Organ
911
pancreas
775
liver
654
connective tissue
497
epithelium
adipose tissue
355
heart
272
kidney
249
brain
221
vasculature
218
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
58
musculature of body
56
eye
41
nerve
34
embryo
22
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
49
hg19
32
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
bed bed3+
bigBed bedMethyl
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
Hi-C
total RNA-seq
ATAC-seq
RRBS
pCHi-C
small RNA-seq
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
1
2
1
1
spleen
20
1
1
muscle of leg
7
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
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