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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
189
total RNA-seq
22
ATAC-seq
5
WGBS
3
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
194
DNA binding
193
Transcription
23
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
107
control
65
histone modification
64
histone
44
narrow histone mark
22
transcription factor
20
broad histone mark
3
RNA binding protein
1
recombinant protein
Date released
194
May, 2020
66
November, 2017
45
August, 2017
40
May, 2022
32
August, 2021
13
December, 2017
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
November, 2018
1
December, 2018
1
February, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
425
Homo sapiens
Biosample type
309
tissue
107
cell line
8
primary cell
1
in vitro differentiated cells
Organ
833
pancreas
637
connective tissue
477
adipose tissue
443
epithelium
425
liver
299
heart
250
kidney
159
bone element
156
brain
151
vasculature
149
blood vessel
116
artery
55
eye
48
musculature of body
38
limb
34
embryo
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
425
AMP
Genome assembly (visualization)
263
hg19
199
GRCh38
Lab
354
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
bigBed narrowPeak
month_released!
April, 2020
BIOSAMPLE
ASSAY
425 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
104
167
20
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
85
14
1
1
2
2
1
1
primary cell
hepatocyte
1
5
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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