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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
14
total RNA-seq
2
Hi-C
1
FAIRE-seq
1
GRO-seq
Assay category
36
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
Target of assay
25
histone
25
histone modification
13
narrow histone mark
12
broad histone mark
8
control
3
transcription factor
Date released
19
October, 2019
13
February, 2018
10
December, 2017
8
August, 2021
2
May, 2021
1
January, 2018
1
March, 2020
Available data
56
bam
44
bigWig
27
bed narrowPeak
27
fastq
14
tsv
13
bigBed narrowPeak
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
54
Homo sapiens
Biosample type
26
in vitro differentiated cells
20
primary cell
8
cell line
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
41
hg19
36
GRCh38
1
hg18
Lab
54
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
hdf5
organ_slims!
thymus
BIOSAMPLE
ASSAY
54 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
FAIRE-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
15
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
endothelial cell of umbilical vein
17
2
1
cell line
H1-hESC
8
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