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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
6
single cell RNA-seq
6
total RNA-seq
3
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
91
DNA binding
12
Transcription
3
3D chromatin structure
3
DNA accessibility
3
DNA methylation
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
18
control
4
RNA binding protein
4
transcription factor
Date released
45
May, 2019
43
October, 2019
7
July, 2019
6
August, 2021
6
November, 2017
4
March, 2020
2
February, 2020
Available data
109
bam
91
bigWig
80
bed narrowPeak
78
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
13
tsv
bed bed3+
6
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
hdf5
1
tar
Organism
113
Homo sapiens
Biosample type
86
tissue
27
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
113
AMP
Genome assembly (visualization)
83
hg19
75
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed bed3+
hdf5
organ_slims!
heart
BIOSAMPLE
ASSAY
113 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
tibial artery
23
1
1
aorta
13
4
1
1
2
1
thoracic aorta
16
2
1
ascending aorta
16
2
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
17
2
1
choroid plexus epithelial cell
3
1
brain microvascular endothelial cell
3
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