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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
46
ATAC-seq
2
WGBS
1
Hi-C
Assay category
79
DNA binding
46
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
50
May, 2019
35
February, 2023
24
October, 2019
14
February, 2021
4
July, 2019
1
March, 2020
Available data
154
bam
127
bigWig
112
bed narrowPeak
tsv
62
bigBed narrowPeak
6
tagAlign
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
128
Homo sapiens
Biosample type
114
tissue
14
cell line
Organ
604
liver
500
pancreas
epithelium
kidney
225
brain
195
heart
179
connective tissue
155
vasculature
151
blood vessel
101
bone element
84
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
53
musculature of body
52
eye
36
nerve
23
spleen
20
embryo
20
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
128
AMP
Genome assembly (visualization)
108
GRCh38
73
hg19
Lab
128
AMP-T2D consortium
files.file_type!
bed bed3+
tsv
organ_slims!
epithelium
kidney
BIOSAMPLE
ASSAY
128 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
Hi-C
tissue
coronary artery
5
36
tibial artery
23
1
thoracic aorta
16
1
aorta
13
2
1
ascending aorta
16
cell line
smooth muscle cell of the coronary artery
6
8
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