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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
total RNA-seq
39
ChIP-seq
13
ATAC-seq
6
Hi-C
5
RRBS
2
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
Assay category
67
Transcription
39
DNA binding
13
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
66
February, 2021
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
5
March, 2020
4
February, 2023
2
February, 2020
1
January, 2018
1
May, 2021
1
May, 2022
Available data
126
bigWig
123
bam
txt
68
bed narrowPeak
67
tsv
47
bigBed narrowPeak
46
bed broadPeak
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
133
Homo sapiens
Biosample type
119
tissue
14
primary cell
Organ
911
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
brain
223
vasculature
219
blood vessel
214
kidney
137
artery
86
limb
71
bone element
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
132
AMP
1
T1D
Genome assembly (visualization)
109
hg19
86
GRCh38
Lab
132
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
files.file_type!
bed bed3+
txt
organ_slims!
brain
BIOSAMPLE
ASSAY
133 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
tissue
bone tissue
58
skeletal muscle tissue
1
22
1
4
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
+ See 13 more…
primary cell
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
megakaryocyte
1
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