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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
84
RNA microarray
65
single cell RNA-seq
27
snATAC-seq
22
ATAC-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
Assay category
610
Transcription
49
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
313
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
572
bam
559
tsv
551
bigWig
89
txt
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
bed bed3+
Organism
760
Homo sapiens
Biosample type
592
tissue
95
cell line
47
primary cell
26
in vitro differentiated cells
Organ
454
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
55
kidney
32
epithelium
32
pancreas
8
skeleton
6
limb
2
liver
Project
668
AMP
47
KPMP
45
HPAP
Genome assembly (visualization)
572
hg19
568
GRCh38
Lab
668
AMP-T2D consortium
47
KPMP
45
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
files.file_type!
bed bed3+
vcf
BIOSAMPLE
ASSAY
760 results
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Clear Filters
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
ATAC-seq
ChIP-seq
WGBS
snDrop-seq
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
52
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
primary cell
Langerhans cell
12
27
pancreatic alpha cell
6
osteoblast
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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