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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 364ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 2DNase-seq
  • 1Hi-C
Assay category
  • 364DNA binding
  • 163Transcription
  • 20DNA accessibility
  • 13D chromatin structure
Target of assay
  • 219transcription factor
  • 82recombinant protein
  • 75control
  • 68histone
  • 68histone modification
  • 38broad histone mark
  • 30narrow histone mark
  • 26RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 173November, 2017
  • 138August, 2017
  • 72September, 2018
  • 48November, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 12January, 2019
  • 8October, 2017
  • 4December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 562fastq
  • 560bam
  • 482bigWig
  • 283bed narrowPeak
  • 244bigBed narrowPeak
  • 163tsv
  • 17bed broadPeak
  • bed bed3+
  • 11tagAlign
  • 10bigBed broadPeak
Organism
  • 542Homo sapiens
Biosample type
  • 227cell line
  • 191tissue
  • 115primary cell
  • 15in vitro differentiated cells
Organ
  • 261liver
  • 213pancreas
  • 78epithelium
  • 26connective tissue
  • 23adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 4brain
  • 4embryo
Project
  • 548AMP
Genome assembly (visualization)
  • 466hg19
  • 463GRCh38
Lab
  • 547AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 53missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

548 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG220551
GM1287816
tissue
islet of Langerhans891
liver50
pancreas13
subcutaneous adipose tissue9
white adipose tissue8
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
primitive gut cell2
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