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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 121ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
Assay category
  • 121DNA binding
  • 37Transcription
  • 6DNA methylation
  • 2DNA accessibility
Target of assay
  • 58transcription factor
  • 47histone
  • 47histone modification
  • 35RNA binding protein
  • 25broad histone mark
  • 22narrow histone mark
  • 20chromatin remodeller
  • 15control
Date released
  • 37December, 2017
  • 22November, 2017
  • 22November, 2018
  • 21April, 2018
  • 21October, 2018
  • 12August, 2017
  • 12January, 2019
  • 11July, 2018
  • 5January, 2018
  • 2December, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 187fastq
  • 178bam
  • 160bigWig
  • 111bed narrowPeak
  • 88bigBed narrowPeak
  • 34tsv
  • bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 171Homo sapiens
Biosample type
  • 48cell line
  • 45tissue
  • 40in vitro differentiated cells
  • 37primary cell
  • 1stem cell
Organ
  • 61liver
  • 51pancreas
  • 45epithelium
  • 11embryo
  • 10blood
  • 10bodily fluid
  • 9connective tissue
  • 7spleen
  • 4adipose tissue
  • 1brain
Project
  • 170AMP
  • 1HPAP
Genome assembly (visualization)
  • 141GRCh38
  • 137hg19
  • 5hg18
Lab
  • 169AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 17inconsistent control read length
  • 8inconsistent control run_type
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

171 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
cell line
HepG238
GM1287810
tissue
body of pancreas20
spleen7
right lobe of liver6
adipose tissue3
islet of Langerhans21
in vitro differentiated cells
hepatocyte15
pancreatic endoderm61
adipocyte5
Hepatic endoderm4
Posterior foregut21
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
stem cell
hESC1
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