Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
37
total RNA-seq
28
single cell RNA-seq
26
ATAC-seq
11
WGBS
Assay category
131
DNA binding
65
Transcription
26
DNA accessibility
11
DNA methylation
Target of assay
102
transcription factor
26
control
18
RNA binding protein
3
chromatin remodeller
Date released
39
November, 2017
32
December, 2018
27
October, 2018
24
May, 2022
18
September, 2020
17
April, 2018
17
November, 2018
15
February, 2018
11
August, 2017
8
January, 2019
8
July, 2018
6
February, 2021
6
October, 2017
4
December, 2017
1
June, 2018
Available data
233
fastq
209
bam
159
bigWig
126
bed narrowPeak
102
bigBed narrowPeak
47
tsv
6
txt
3
bed bedMethyl
3
bigBed bedMethyl
bed bed3+
2
zippedFastqFolder
Organism
233
Homo sapiens
Biosample type
88
cell line
80
tissue
50
primary cell
15
in vitro differentiated cells
Organ
82
pancreas
49
liver
45
blood
45
bodily fluid
40
epithelium
24
adipose tissue
24
connective tissue
8
spleen
4
embryo
Project
209
AMP
24
HPAP
Genome assembly (visualization)
172
hg19
157
GRCh38
Lab
185
AMP-T2D consortium
24
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
Audit category:
5
missing controlled_by
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
233 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
cell line
GM12878
45
HepG2
43
tissue
islet of Langerhans
6
18
body of pancreas
13
4
subcutaneous adipose tissue
8
1
spleen
7
1
omental fat pad
6
1
+ See 5 more…
primary cell
pancreatic alpha cell
15
4
6
pancreatic beta cell
1
4
mesenchymal cell
4
pancreatic cell
4
pancreatic delta cell
3
+ See 4 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
See all biosamples
Download