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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 221ChIP-seq
  • 4RRBS
  • 2DNase-seq
Assay category
  • 221DNA binding
  • 4DNA methylation
  • 2DNA accessibility
Target of assay
  • 98transcription factor
  • 76histone
  • 76histone modification
  • 47control
  • 38broad histone mark
  • 38narrow histone mark
  • 21RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 114November, 2017
  • 58August, 2017
  • 22February, 2018
  • 12December, 2017
  • 9October, 2017
  • 7November, 2018
  • 4September, 2017
  • 1January, 2019
Available data
  • 264fastq
  • 258bam
  • 215bigWig
  • 200bed narrowPeak
  • 148bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 39tagAlign
  • bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 220Homo sapiens
Biosample type
  • 113cell line
  • 48primary cell
  • 34tissue
  • 32in vitro differentiated cells
Organ
  • 118liver
  • 37pancreas
  • 31epithelium
  • 18brain
  • 15embryo
  • 6vasculature
  • 3blood vessel
  • 3connective tissue
  • 2adipose tissue
  • 2musculature of body
  • 1blood
  • 1bodily fluid
Project
  • 227AMP
Genome assembly (visualization)
  • 189hg19
  • 153GRCh38
Lab
  • 227AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

227 results

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Clear Filters
ChIP-seq
RRBS
DNase-seq
cell line
HepG2112
GM128781
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
tissue
pancreas10
brain9
liver51
islet of Langerhans5
adipose tissue2
in vitro differentiated cells
pancreatic endoderm12
primitive gut cell4
Hepatic endoderm3
embryonic stem cell3
endocrine cell3
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