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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
9
ChIP-seq
1
GRO-seq
Assay category
14
Transcription
9
DNA binding
Target of assay
histone
10
histone modification
7
narrow histone mark
6
control
3
broad histone mark
3
transcription factor
Date released
8
August, 2021
7
February, 2018
6
December, 2017
2
May, 2021
1
January, 2018
Available data
24
bam
18
bigWig
15
fastq
14
tsv
3
bed narrowPeak
bed bed3+
Organism
24
Homo sapiens
Biosample type
16
in vitro differentiated cells
8
cell line
Organ
778
pancreas
679
liver
579
connective tissue
adipose tissue
413
epithelium
266
heart
199
kidney
159
bone element
152
vasculature
149
blood vessel
117
artery
68
blood
68
bodily fluid
64
brain
54
eye
37
limb
29
musculature of body
24
embryo
20
lung
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
24
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
1
hg18
Lab
24
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
files.file_type!
bed bed3+
lab.title!
KPMP
organ_slims!
adipose tissue
target.investigated_as!
histone
BIOSAMPLE
ASSAY
24 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
7
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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