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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
27
DNA binding
24
Transcription
5
DNA accessibility
1
DNA methylation
Target of assay
185
histone
histone modification
115
narrow histone mark
70
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
14
July, 2019
14
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
71
bam
49
bigWig
bed bed3+
32
bed narrowPeak
32
bigBed narrowPeak
31
bed broadPeak
31
bigBed broadPeak
26
tsv
19
tagAlign
7
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
59
Homo sapiens
Biosample type
54
tissue
5
primary cell
Organ
678
liver
626
pancreas
579
connective tissue
453
adipose tissue
266
heart
epithelium
246
kidney
159
bone element
152
vasculature
149
blood vessel
117
artery
68
blood
68
bodily fluid
64
brain
54
eye
37
limb
29
musculature of body
24
embryo
20
lung
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
17
hg19
15
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bed3+
lab.title!
Klaus Kaestner, Upenn
organ_slims!
epithelium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
3
1
1
1
cerebellum (Hemisphere)
2
1
1
1
frontal cortex
2
1
1
temporal lobe
2
1
1
caudate nucleus
2
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
2
cerebellar granule cell
2
Purkinje cell
1
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