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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
62
Homo sapiens
Biosample type
49
tissue
13
primary cell
Organ
862
pancreas
746
liver
653
connective tissue
500
epithelium
484
adipose tissue
271
heart
251
brain
217
vasculature
213
blood vessel
158
bone element
146
kidney
135
artery
86
limb
62
musculature of body
61
blood
61
bodily fluid
57
eye
41
nerve
26
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
62
AMP
Genome assembly (visualization)
39
hg19
20
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
bed bed3+
lab.title!
Kyle Gaulton, UCSD
month_released!
August, 2021
organ_slims!
ovary
BIOSAMPLE
ASSAY
62 results
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Clear Filters
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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