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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
69
ChIP-seq
6
ATAC-seq
6
WGBS
2
pCHi-C
1
RNA microarray
Assay category
389
Transcription
69
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
13
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
53
August, 2017
23
October, 2018
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
430
bam
413
bigWig
389
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
472
Homo sapiens
Biosample type
472
tissue
1
in vitro differentiated cells
Organ
911
pancreas
769
liver
638
connective tissue
492
epithelium
473
adipose tissue
338
heart
265
kidney
236
brain
213
vasculature
210
blood vessel
159
bone element
134
artery
81
limb
69
blood
69
bodily fluid
56
eye
52
musculature of body
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
473
AMP
Genome assembly (visualization)
408
hg19
406
GRCh38
Lab
473
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
8
missing controlled_by
files.file_type!
bed bed3+
lab.title!
Struan F.A. Grant, CHOP
month_released!
July, 2019
organ_slims!
stomach
BIOSAMPLE
ASSAY
473 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
3
12
1
1
omental fat pad
1
11
1
white adipose tissue
8
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in vitro differentiated cells
white fat cell
1
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