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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
61
total RNA-seq
47
ATAC-seq
6
single cell RNA-seq
3
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
96
DNA binding
67
Transcription
48
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
20
control
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
44
October, 2019
35
February, 2023
9
July, 2019
6
August, 2021
4
March, 2020
3
February, 2020
Available data
176
bam
145
bigWig
126
bed narrowPeak
76
bigBed narrowPeak
68
tsv
10
bed broadPeak
10
bigBed broadPeak
bed bed3+
6
tagAlign
3
hic
2
bedpe bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tar
Organism
217
Homo sapiens
Biosample type
129
tissue
66
cell line
22
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
217
AMP
Genome assembly (visualization)
176
GRCh38
146
hg19
Lab
217
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed bed3+
lab.title!
Xin Sun, UCSD
organ_slims!
brain
BIOSAMPLE
ASSAY
217 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
1
36
tibial artery
23
1
1
aorta
13
1
4
1
2
1
thoracic aorta
16
2
1
ascending aorta
16
2
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
17
2
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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