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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
85
ChIP-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
85
DNA binding
10
DNA methylation
3
3D chromatin structure
3
DNA accessibility
Target of assay
95
histone
95
histone modification
57
broad histone mark
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
42
April, 2019
25
May, 2024
22
July, 2019
12
May, 2019
7
March, 2020
6
October, 2019
3
June, 2019
3
May, 2021
2
February, 2020
1
February, 2023
Available data
122
bigWig
113
bam
113
tsv
100
bed narrowPeak
69
bigBed narrowPeak
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
215
Homo sapiens
Biosample type
208
tissue
6
primary cell
1
in vitro differentiated cells
Organ
847
pancreas
720
liver
623
connective tissue
472
adipose tissue
453
epithelium
323
heart
261
kidney
197
vasculature
blood vessel
159
bone element
134
brain
131
artery
71
limb
68
blood
68
bodily fluid
54
eye
49
musculature of body
33
nerve
27
embryo
22
spleen
20
lung
16
skeleton
14
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
215
AMP
Genome assembly (visualization)
94
GRCh38
68
hg19
Lab
190
AMP-T2D consortium
25
Patrick T. Ellinor, Broad
Audit category:
3
inconsistent ontology term
files.file_type!
bed bed3+
month_released!
August, 2018
organ_slims!
blood vessel
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
215 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
26
3
4
2
1
1
1
left cardiac atrium
18
25
heart right ventricle
17
9
1
2
1
1
right cardiac atrium
18
4
1
1
heart
1
10
4
1
1
1
+ See 9 more…
primary cell
cardiac fibroblast
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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