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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
9
ChIP-seq
1
GRO-seq
1
pCHi-C
Assay category
14
Transcription
9
DNA binding
Target of assay
6
histone
6
histone modification
3
broad histone mark
3
control
3
narrow histone mark
Date released
13
February, 2018
December, 2017
8
August, 2021
2
May, 2021
1
January, 2018
1
March, 2020
Available data
23
bam
21
bigWig
15
tsv
14
fastq
6
bed narrowPeak
Organism
25
Homo sapiens
Biosample type
16
in vitro differentiated cells
8
cell line
1
tissue
Organ
908
pancreas
715
liver
657
connective tissue
485
adipose tissue
479
epithelium
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
24
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
1
hg18
Lab
25
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bed bed3+
month_released!
December, 2017
September, 2017
BIOSAMPLE
ASSAY
25 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
4
9
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
tissue
adrenal gland
1
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