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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
9
ATAC-seq
4
Hi-C
4
total RNA-seq
3
WGBS
1
pCHi-C
Assay category
79
DNA binding
9
DNA accessibility
4
3D chromatin structure
4
Transcription
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
21
control
17
narrow histone mark
3
other context
3
other post-translational modification
3
transcription factor
Date released
65
October, 2019
8
November, 2018
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
February, 2020
1
March, 2020
1
October, 2017
Available data
131
bam
104
bigWig
103
bed narrowPeak
94
bigBed narrowPeak
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
17
fastq
5
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
100
Homo sapiens
Biosample type
100
tissue
Organ
916
pancreas
776
liver
655
connective tissue
503
epithelium
483
adipose tissue
360
heart
276
kidney
239
brain
220
vasculature
216
blood vessel
159
bone element
135
artery
83
limb
60
musculature of body
56
eye
42
blood
42
bodily fluid
40
nerve
34
embryo
20
lung
20
vein
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
100
AMP
Genome assembly (visualization)
72
GRCh38
70
hg19
Lab
100
AMP-T2D consortium
files.file_type!
bed bed3+
month_released!
December, 2018
February, 2020
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
tibial nerve
35
1
4
tibial artery
23
1
spleen
13
1
2
1
muscle of leg
7
1
gastrocnemius medialis
4
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