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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
38
ATAC-seq
9
total RNA-seq
6
single cell RNA-seq
3
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
89
DNA binding
39
DNA accessibility
15
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
19
control
RNA binding protein
4
transcription factor
Date released
February, 2021
47
May, 2019
43
October, 2019
35
February, 2023
9
July, 2019
6
August, 2021
4
March, 2020
3
February, 2020
2
November, 2017
Available data
113
bed narrowPeak
110
bam
90
bigWig
75
bigBed narrowPeak
16
tsv
12
bed broadPeak
12
bigBed broadPeak
bed bed3+
3
hic
2
bedpe bed3+
2
fastq
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
149
Homo sapiens
Biosample type
125
tissue
24
primary cell
Organ
878
pancreas
718
liver
463
epithelium
286
heart
265
kidney
248
brain
193
connective tissue
152
vasculature
149
blood vessel
94
adipose tissue
80
limb
70
artery
62
musculature of body
59
blood
59
bodily fluid
56
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
AMP
Genome assembly (visualization)
110
GRCh38
81
hg19
Lab
149
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed bed3+
month_released!
February, 2021
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
4
36
1
tibial artery
23
1
1
aorta
13
1
4
1
2
1
thoracic aorta
15
1
2
ascending aorta
15
2
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
2
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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