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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
Assay category
43
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
6
March, 2020
4
October, 2019
2
February, 2020
1
January, 2018
1
May, 2022
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
bed bed3+
33
bigBed broadPeak
15
tagAlign
10
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
67
Homo sapiens
Biosample type
54
tissue
13
primary cell
Organ
885
pancreas
776
liver
471
epithelium
297
heart
268
kidney
251
brain
203
connective tissue
157
vasculature
153
blood vessel
99
adipose tissue
80
limb
71
artery
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
67
AMP
Genome assembly (visualization)
39
hg19
20
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
bed bed3+
month_released!
February, 2021
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
islet of Langerhans
4
+ See 2 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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