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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
8
snATAC-seq
1
pCHi-C
Assay category
60
DNA binding
8
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
January, 2018
1
March, 2020
Available data
60
bam
60
fastq
54
bed narrowPeak
54
bigBed narrowPeak
54
bigWig
1
tsv
Organism
69
Homo sapiens
Biosample type
60
cell line
8
primary cell
1
tissue
Organ
917
pancreas
778
liver
656
connective tissue
503
epithelium
484
adipose tissue
363
heart
276
kidney
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
68
blood
68
bodily fluid
61
musculature of body
57
eye
41
nerve
33
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
8
T1D
Genome assembly (visualization)
54
GRCh38
54
hg19
Lab
61
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
files.file_type!
bed bed3+
month_released!
January, 2018
organ_slims!
brain
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
snATAC-seq
pCHi-C
cell line
GM12878
60
primary cell
peripheral blood mononuclear cell
8
tissue
gastric (mucosa of stomach)
1
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