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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
7
total RNA-seq
6
Hi-C
6
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
29
DNA binding
10
Transcription
7
DNA methylation
6
3D chromatin structure
1
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
26
August, 2017
12
July, 2019
June, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
28
bigWig
19
bed narrowPeak
15
bam
15
tagAlign
13
bed broadPeak
10
tsv
6
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
bed bed3+
1
txt
Organism
54
Homo sapiens
Biosample type
50
tissue
4
primary cell
Organ
912
pancreas
728
liver
645
connective tissue
497
epithelium
485
adipose tissue
358
heart
273
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
54
blood
54
bodily fluid
54
eye
52
musculature of body
41
nerve
34
embryo
20
lung
20
vein
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
33
hg19
13
GRCh38
Lab
54
AMP-T2D consortium
files.file_type!
bed bed3+
month_released!
June, 2019
November, 2018
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
left ventricle myocardium
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
1
1
pericardium fibroblast
1
skeletal muscle cell
1
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