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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
6
ATAC-seq
4
Hi-C
1
WGBS
1
total RNA-seq
Assay category
8
DNA binding
6
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
Transcription
Target of assay
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
1
control
Date released
7
May, 2019
6
February, 2021
5
July, 2019
1
February, 2020
1
October, 2019
Available data
46
bam
44
bed narrowPeak
39
bigWig
38
bigBed narrowPeak
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tsv
Organism
20
Homo sapiens
Biosample type
20
tissue
Organ
898
pancreas
778
liver
657
connective tissue
485
adipose tissue
484
epithelium
363
heart
276
kidney
251
brain
223
vasculature
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
20
AMP
Genome assembly (visualization)
12
GRCh38
12
hg19
Lab
20
AMP-T2D consortium
files.file_type!
bed bed3+
month_released!
September, 2020
organ_slims!
blood vessel
nerve
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
ATAC-seq
Hi-C
WGBS
total RNA-seq
tissue
muscle of leg
7
1
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
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