Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
3
single cell RNA-seq
1
Hi-C
1
pCHi-C
Assay category
113
DNA binding
3
Transcription
1
3D chromatin structure
Target of assay
70
transcription factor
21
histone
21
histone modification
20
control
11
narrow histone mark
10
broad histone mark
6
RNA binding protein
5
chromatin remodeller
Date released
713
February, 2021
397
May, 2021
378
August, 2017
341
May, 2020
340
November, 2017
314
August, 2021
299
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
76
October, 2018
73
September, 2018
64
March, 2020
63
November, 2018
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
133
fastq
131
bam
105
bigWig
102
bed narrowPeak
80
bigBed narrowPeak
bed bed3+
3
tsv
1
bedpe bed3+
Organism
118
Homo sapiens
Biosample type
55
tissue
32
in vitro differentiated cells
28
cell line
3
primary cell
Organ
64
liver
27
blood
27
bodily fluid
22
epithelium
10
embryo
7
spleen
3
pancreas
1
adipose tissue
1
connective tissue
Project
118
AMP
Genome assembly (visualization)
95
GRCh38
95
hg19
Lab
118
AMP-T2D consortium
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
files.file_type!
bed bed3+
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
118 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
Hi-C
pCHi-C
tissue
liver
38
right lobe of liver
10
spleen
7
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
6
Hepatic endoderm
4
Posterior foregut
2
definitive endodermal cell
2
+ See 2 more…
cell line
GM12878
27
HepG2
1
primary cell
pancreatic alpha cell
2
pancreatic acinar cell
1
See all biosamples
Download