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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
145
ChIP-seq
100
ATAC-seq
7
WGBS
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
196
Transcription
145
DNA binding
101
DNA accessibility
7
DNA methylation
Target of assay
78
transcription factor
34
histone
34
histone modification
33
control
30
narrow histone mark
27
RNA binding protein
16
recombinant protein
13
chromatin remodeller
4
broad histone mark
3
other context
3
other post-translational modification
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
400
bam
366
bigWig
194
tsv
121
bed narrowPeak
118
fastq
94
bigBed narrowPeak
50
tagAlign
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
450
Homo sapiens
Biosample type
217
tissue
148
primary cell
85
cell line
Organ
249
liver
33
blood
33
bodily fluid
15
spleen
5
pancreas
Project
405
AMP
45
T1D
Genome assembly (visualization)
348
hg19
303
GRCh38
Lab
405
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
450 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
single cell RNA-seq
tissue
liver
143
54
spleen
13
2
pancreas
2
1
body of pancreas
2
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
HepG2
5
45
1
1
GM12878
33
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