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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
7
WGBS
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
FAIRE-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
single cell RNA-seq
Assay category
54
DNA binding
7
DNA methylation
5
Transcription
1
3D chromatin structure
1
DNA accessibility
Target of assay
64
transcription factor
21
RNA binding protein
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
563
February, 2021
396
May, 2021
378
August, 2017
341
May, 2020
340
November, 2017
314
August, 2021
299
October, 2019
199
May, 2022
193
February, 2023
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
76
October, 2018
73
September, 2018
64
March, 2020
63
November, 2018
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
72
fastq
71
bam
65
bigWig
58
bed narrowPeak
58
bigBed narrowPeak
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
1
hic
Organism
64
Homo sapiens
Biosample type
47
cell line
17
tissue
2
primary cell
2
stem cell
Organ
34
liver
15
blood
15
bodily fluid
8
spleen
5
pancreas
Project
63
AMP
4
community
1
ITG
Genome assembly (visualization)
56
GRCh38
49
hg19
Lab
63
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
bone element
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
68 results
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Clear Filters
ChIP-seq
WGBS
CRISPR RNA-seq
CRISPRi RNA-seq
FAIRE-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
single cell RNA-seq
cell line
HepG2
29
1
GM12878
15
EndoC-BH1
1
1
tissue
spleen
6
2
liver
4
pancreas
2
1
body of pancreas
2
primary cell
chondrocytes
1
pancreatic cell
1
stem cell
SB Ad3.1
1
1
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