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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
11
ATAC-seq
3
single cell RNA-seq
1
total RNA-seq
Assay category
400
DNA binding
11
DNA accessibility
4
Transcription
Target of assay
242
transcription factor
86
histone
86
histone modification
69
control
66
recombinant protein
50
broad histone mark
36
narrow histone mark
35
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
647
February, 2021
400
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
308
August, 2021
263
October, 2019
199
May, 2022
168
July, 2018
166
February, 2023
94
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
June, 2019
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
386
bam
328
bigWig
318
fastq
309
bed narrowPeak
308
bigBed narrowPeak
78
tagAlign
66
bed broadPeak
60
bigBed broadPeak
3
tar
Organism
415
Homo sapiens
Biosample type
315
cell line
97
tissue
3
primary cell
Organ
315
liver
91
brain
14
kidney
6
epithelium
vasculature
3
blood vessel
1
adipose tissue
1
connective tissue
Project
415
AMP
Genome assembly (visualization)
288
GRCh38
276
hg19
Lab
401
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bed3+
month_released!
June, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
415 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
kidney
11
3
+ See 3 more…
primary cell
astrocyte of the cerebellum
3
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