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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
26
total RNA-seq
14
ATAC-seq
7
WGBS
2
single cell RNA-seq
1
FAIRE-seq
Assay category
102
DNA binding
28
Transcription
15
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
32
histone
32
histone modification
21
RNA binding protein
17
broad histone mark
16
recombinant protein
15
narrow histone mark
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
713
February, 2021
406
November, 2017
397
May, 2021
371
August, 2017
341
May, 2020
313
August, 2021
266
October, 2019
200
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
24
February, 2020
23
October, 2017
18
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
161
fastq
159
bam
152
bigWig
119
bed narrowPeak
87
bigBed narrowPeak
26
tsv
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
csv
Organism
152
Homo sapiens
Biosample type
74
primary cell
61
cell line
17
tissue
Organ
77
pancreas
61
epithelium
50
liver
15
blood
15
bodily fluid
8
spleen
Project
152
AMP
Genome assembly (visualization)
142
GRCh38
134
hg19
Lab
152
AMP-T2D consortium
Audit category:
35
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
nerve
BIOSAMPLE
ASSAY
152 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 1 more…
cell line
HepG2
45
1
GM12878
15
tissue
spleen
6
2
liver
4
pancreas
2
1
body of pancreas
2
See all biosamples
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