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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
402
total RNA-seq
69
ChIP-seq
18
ATAC-seq
6
WGBS
4
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
405
Transcription
69
DNA binding
18
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
13
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
394
February, 2021
53
August, 2017
23
October, 2018
12
July, 2019
9
February, 2023
3
March, 2020
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
450
bam
425
bigWig
403
tsv
44
fastq
21
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
bed bed3+
4
bed bed3
4
txt
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
502
Homo sapiens
Biosample type
500
tissue
2
primary cell
1
in vitro differentiated cells
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
503
AMP
Genome assembly (visualization)
432
hg19
426
GRCh38
Lab
503
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
8
missing controlled_by
files.file_type!
bed bed3+
organ_slims!
spleen
BIOSAMPLE
ASSAY
503 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
white adipose tissue
8
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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