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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 398total RNA-seq
  • 69ChIP-seq
  • 6ATAC-seq
  • 6WGBS
  • 3small RNA-seq
  • 2pCHi-C
  • 1RNA microarray
Assay category
  • 401Transcription
  • 69DNA binding
  • 6DNA accessibility
  • 6DNA methylation
Target of assay
  • 32histone
  • 32histone modification
  • 24control
  • 20broad histone mark
  • 13transcription factor
  • 12narrow histone mark
  • 5RNA binding protein
Date released
  • 386February, 2021
  • 53August, 2017
  • 23October, 2018
  • 12July, 2019
  • 2February, 2020
  • 1August, 2018
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1March, 2020
  • 1May, 2023
  • 1November, 2019
  • 1October, 2017
  • 1October, 2019
Available data
  • 442bam
  • 425bigWig
  • 401tsv
  • 44fastq
  • 13bed narrowPeak
  • 10bigBed narrowPeak
  • 8tagAlign
  • bed bed3+
  • 3bed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1bedpe bed3+
Organism
  • 484Homo sapiens
Biosample type
  • 482tissue
  • 2primary cell
  • 1in vitro differentiated cells
Organ
  • 917pancreas
  • 778liver
  • 657connective tissue
  • 503epithelium
  • 485adipose tissue
  • 363heart
  • 276kidney
  • 251brain
  • 223vasculature
  • 219blood vessel
  • 159bone element
  • 137artery
  • 86limb
  • 69blood
  • 69bodily fluid
  • 62musculature of body
  • 57eye
  • 41nerve
  • 34embryo
  • 24spleen
  • 20lung
  • 20vein
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 485AMP
Genome assembly (visualization)
  • 420hg19
  • 418GRCh38
Lab
  • 485AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 8missing controlled_by
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

485 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue3822331
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue712111
omental fat pad51111
white adipose tissue8
primary cell
mesenchymal stem cell of adipose11
in vitro differentiated cells
white fat cell1
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