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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
9
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
126
DNA binding
17
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
50
histone
50
histone modification
34
broad histone mark
23
control
16
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
65
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
Available data
174
bam
146
bed narrowPeak
146
bigWig
138
bigBed narrowPeak
60
fastq
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
155
Homo sapiens
Biosample type
86
tissue
61
cell line
8
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
147
AMP
8
T1D
Genome assembly (visualization)
115
hg19
114
GRCh38
Lab
147
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
bed bed3+
organ_slims!
ureter
BIOSAMPLE
ASSAY
155 results
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ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
+ See 6 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
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