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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
8
snATAC-seq
2
ATAC-seq
2
WGBS
1
pCHi-C
Assay category
70
DNA binding
10
DNA accessibility
2
DNA methylation
Target of assay
57
transcription factor
14
control
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
32
December, 2018
21
November, 2018
19
January, 2019
8
January, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
74
bam
74
fastq
61
bigWig
58
bed narrowPeak
57
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
83
Homo sapiens
Biosample type
51
cell line
24
tissue
8
primary cell
Organ
910
pancreas
720
liver
647
connective tissue
495
epithelium
480
adipose tissue
352
heart
273
kidney
248
brain
218
vasculature
215
blood vessel
159
bone element
136
artery
86
limb
62
musculature of body
59
blood
59
bodily fluid
56
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
75
AMP
8
T1D
Genome assembly (visualization)
59
GRCh38
58
hg19
Lab
75
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
bed bed3+
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
cell line
GM12878
50
1
tissue
spleen
20
1
2
1
primary cell
peripheral blood mononuclear cell
8
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