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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 99ChIP-seq
  • 61total RNA-seq
  • 46ATAC-seq
  • 6single cell RNA-seq
  • 3Hi-C
  • 2WGBS
  • 1FAIRE-seq
  • 1pCHi-C
Assay category
  • 99DNA binding
  • 67Transcription
  • 47DNA accessibility
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 70histone
  • 70histone modification
  • 45broad histone mark
  • 25narrow histone mark
  • 21control
  • 8transcription factor
  • 4RNA binding protein
Date released
  • 66February, 2021
  • 50May, 2019
  • 43October, 2019
  • 35February, 2023
  • 9July, 2019
  • 6August, 2021
  • 4March, 2020
  • 3February, 2020
  • 3November, 2017
Available data
  • 180bam
  • 150bigWig
  • 129bed narrowPeak
  • 79bigBed narrowPeak
  • 68tsv
  • 13bed broadPeak
  • 13bigBed broadPeak
  • bed bed3+
  • 6tagAlign
  • 3fastq
  • 3hic
  • 2bedpe bed3+
  • 2hdf5
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 219Homo sapiens
Biosample type
  • 128tissue
  • 66cell line
  • 25primary cell
Organ
  • 917pancreas
  • 778liver
  • 657connective tissue
  • 503epithelium
  • 485adipose tissue
  • 363heart
  • 276kidney
  • 251brain
  • 223vasculature
  • 219blood vessel
  • 159bone element
  • 137artery
  • 86limb
  • 69blood
  • 69bodily fluid
  • 62musculature of body
  • 57eye
  • 41nerve
  • 34embryo
  • 24spleen
  • 20lung
  • 20vein
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 219AMP
Genome assembly (visualization)
  • 178GRCh38
  • 149hg19
Lab
  • 219AMP-T2D consortium
Audit category:
  • 1audit script error
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  • bed bed3+
BIOSAMPLE
ASSAY

219 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery5136
tibial artery2311
aorta1314121
thoracic aorta1621
ascending aorta162
cell line
smooth muscle cell of the coronary artery6528
primary cell
endothelial cell of umbilical vein1721
brain microvascular endothelial cell3
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
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