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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 218ChIP-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 218DNA binding
  • 24Transcription
  • 5DNA accessibility
  • 2DNA methylation
Target of assay
  • 187histone
  • 187histone modification
  • 117narrow histone mark
  • 70broad histone mark
  • 31control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 91November, 2017
  • 86October, 2019
  • 28May, 2019
  • 16October, 2017
  • 15July, 2019
  • 12February, 2020
  • 2March, 2020
  • 1February, 2023
Available data
  • 243bam
  • 222bigWig
  • 203bed narrowPeak
  • 127bigBed narrowPeak
  • 118tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • bed bed3+
  • 26tsv
  • 21fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 251Homo sapiens
Biosample type
  • 238tissue
  • 13primary cell
Organ
  • 917pancreas
  • 778liver
  • 657connective tissue
  • 503epithelium
  • 485adipose tissue
  • 363heart
  • 276kidney
  • 251brain
  • 223vasculature
  • 219blood vessel
  • 159bone element
  • 137artery
  • 86limb
  • 69blood
  • 69bodily fluid
  • 62musculature of body
  • 57eye
  • 41nerve
  • 34embryo
  • 24spleen
  • 20lung
  • 20vein
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 251AMP
Genome assembly (visualization)
  • 185GRCh38
  • 139hg19
Lab
  • 251AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 4missing controlled_by
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

251 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain20111
layer of hippocampus23
substantia nigra161
temporal lobe1511
caudate nucleus151
primary cell
choroid plexus epithelial cell31
astrocyte of the cerebellum3
brain microvascular endothelial cell3
cerebellar granule cell2
Purkinje cell1
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