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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
Assay category
30
DNA binding
Target of assay
78
histone
78
histone modification
44
broad histone mark
34
control
33
narrow histone mark
30
transcription factor
10
RNA binding protein
2
chromatin remodeller
Date released
24
August, 2017
5
October, 2018
1
June, 2019
Available data
40
bam
40
bigWig
39
fastq
23
bed narrowPeak
bed bed3+
6
bigBed narrowPeak
Organism
30
Homo sapiens
Biosample type
16
in vitro differentiated cells
13
tissue
1
primary cell
Organ
336
liver
51
blood
51
bodily fluid
30
connective tissue
17
heart
13
adipose tissue
12
pancreas
10
kidney
9
epithelium
9
vasculature
8
blood vessel
6
spleen
5
artery
3
brain
3
embryo
1
eye
Project
30
AMP
Genome assembly (visualization)
30
GRCh38
30
hg19
Lab
30
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
organ_slims!
stomach
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
in vitro differentiated cells
adipocyte
16
tissue
white adipose tissue
8
omental fat pad
3
subcutaneous adipose tissue
2
primary cell
cardiac fibroblast
1
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