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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 142ChIP-seq
  • 21ATAC-seq
  • 6WGBS
  • 4pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 1DNase-seq
  • 1RNA microarray
  • 1RRBS
Assay category
  • 481Transcription
  • 142DNA binding
  • 22DNA accessibility
  • 7DNA methylation
Target of assay
  • 78histone
  • 78histone modification
  • 44broad histone mark
  • 34control
  • 33narrow histone mark
  • 30transcription factor
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 454February, 2021
  • 114August, 2017
  • 23October, 2018
  • 17July, 2019
  • 12June, 2019
  • 10February, 2023
  • 5November, 2020
  • 4October, 2019
  • 3August, 2021
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 2May, 2021
  • 1August, 2018
  • 1January, 2018
  • 1May, 2023
  • 1November, 2019
  • 1October, 2017
Available data
  • 593bam
  • 570bigWig
  • 478tsv
  • 101fastq
  • 75bed narrowPeak
  • 28bigBed narrowPeak
  • bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 656Homo sapiens
Biosample type
  • 541tissue
  • 84in vitro differentiated cells
  • 31primary cell
  • 1stem cell
Organ
  • 917pancreas
  • 778liver
  • 657connective tissue
  • 503epithelium
  • 485adipose tissue
  • 363heart
  • 276kidney
  • 251brain
  • 223vasculature
  • 219blood vessel
  • 159bone element
  • 137artery
  • 86limb
  • 69blood
  • 69bodily fluid
  • 62musculature of body
  • 57eye
  • 41nerve
  • 34embryo
  • 24spleen
  • 20lung
  • 20vein
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 656AMP
  • 1T1D
Genome assembly (visualization)
  • 563hg19
  • 547GRCh38
Lab
  • 654AMP-T2D consortium
  • 2Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 16inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 2inconsistent control read length
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

657 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
DNase-seq
RNA microarray
RRBS
tissue
adipose tissue3822331
bone tissue58
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue712111
omental fat pad51111
in vitro differentiated cells
adipocyte56071
chondrocyte5
immature adipocyte2
cardiac fibroblast1
osteoblast1
primary cell
mesenchymal stem cell7
osteoblast52
cardiac fibroblast51
pancreatic stellate cell4
mesenchymal stem cell of adipose11
stem cell
mesenchymal stem cell1
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