Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
14
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
3
pCHi-C
1
GRO-seq
Assay category
23
Transcription
19
DNA binding
10
DNA accessibility
Target of assay
10
histone
10
histone modification
7
narrow histone mark
6
control
3
broad histone mark
3
transcription factor
Date released
19
April, 2020
13
February, 2018
10
December, 2017
8
August, 2021
3
March, 2020
2
May, 2021
1
January, 2018
Available data
36
bam
29
bigWig
27
fastq
17
tsv
14
bed narrowPeak
bed bed3+
Organism
55
Homo sapiens
Biosample type
26
in vitro differentiated cells
22
tissue
8
cell line
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
37
AMP
19
LungMap
Genome assembly (visualization)
26
GRCh38
26
hg19
1
hg18
Lab
37
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
56 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
pCHi-C
GRO-seq
in vitro differentiated cells
pancreatic endoderm
15
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
lung
10
9
1
gastric (mucosa of stomach)
1
sigmoid colon
1
cell line
H1-hESC
8
Download