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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
14
total RNA-seq
2
WGBS
1
ATAC-seq
1
GRO-seq
1
pCHi-C
Assay category
39
DNA binding
14
Transcription
2
DNA methylation
1
DNA accessibility
Target of assay
16
histone
16
histone modification
14
control
9
narrow histone mark
9
transcription factor
7
broad histone mark
3
other context
3
other post-translational modification
Date released
13
February, 2018
10
December, 2017
8
August, 2021
8
November, 2018
7
December, 2018
7
January, 2019
2
May, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
78
bam
63
bigWig
51
fastq
46
bed narrowPeak
31
bigBed narrowPeak
bed bed3+
19
bed broadPeak
19
bigBed broadPeak
15
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
58
Homo sapiens
Biosample type
26
in vitro differentiated cells
24
tissue
8
cell line
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
ureter
Project
58
AMP
Genome assembly (visualization)
41
GRCh38
39
hg19
1
hg18
Lab
58
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
15
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
spleen
20
2
1
1
cell line
H1-hESC
8
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