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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 19ChIP-seq
  • 14total RNA-seq
  • 1GRO-seq
Assay category
  • 19DNA binding
  • 14Transcription
Target of assay
  • 10histone
  • 10histone modification
  • 7narrow histone mark
  • 6control
  • 3broad histone mark
  • 3transcription factor
Date released
  • 13February, 2018
  • 10December, 2017
  • 8August, 2021
  • 2May, 2021
  • 1January, 2018
Available data
  • 36bam
  • 29bigWig
  • 27fastq
  • 14bed narrowPeak
  • 14tsv
  • bed bed3+
Organism
  • 34Homo sapiens
Biosample type
  • 26in vitro differentiated cells
  • 8cell line
Organ
  • 917pancreas
  • 778liver
  • 657connective tissue
  • 503epithelium
  • 485adipose tissue
  • 363heart
  • 276kidney
  • 251brain
  • 223vasculature
  • 219blood vessel
  • 159bone element
  • 137artery
  • 86limb
  • 69blood
  • 69bodily fluid
  • 62musculature of body
  • 57eye
  • 41nerve
  • 34embryo
  • 24spleen
  • 20lung
  • 20vein
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 34AMP
Genome assembly (visualization)
  • 26GRCh38
  • 26hg19
  • 1hg18
Lab
  • 34AMP-T2D consortium
Audit category:
  • 6inconsistent ontology term
Audit category:
  • 1missing controlled_by
Audit category:
  • 2inconsistent control read length
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

34 results

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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm1541
Hepatic endoderm4
mesodermal cell (lineage marker-negative)1
mesodermal cell (pacemaker intermediate)1
cell line
H1-hESC8
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