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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131total RNA-seq
  • 126ChIP-seq
  • 103ATAC-seq
  • 70single cell RNA-seq
  • 6Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 3DNase-seq
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1RNA microarray
Assay category
  • 201Transcription
  • 126DNA binding
  • 107DNA accessibility
  • 63D chromatin structure
  • 6DNA methylation
Target of assay
  • 90histone
  • 90histone modification
  • 47narrow histone mark
  • 43broad histone mark
  • 30control
  • 9transcription factor
  • 8RNA binding protein
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 61September, 2018
  • 52February, 2023
  • 39May, 2022
  • 33April, 2018
  • 33July, 2018
  • 33October, 2019
  • 29August, 2017
  • 26February, 2021
  • 26May, 2021
  • 19December, 2017
  • 19September, 2020
  • 16November, 2019
  • 11July, 2019
  • 7August, 2020
  • 6December, 2019
  • 6June, 2019
  • 6March, 2020
  • 6November, 2017
  • 6November, 2020
  • 5May, 2019
  • 5September, 2017
  • 3August, 2018
  • 3August, 2021
  • 3October, 2022
  • 2October, 2018
  • 1June, 2018
Available data
  • 317bam
  • 301bigWig
  • 251fastq
  • 151bed narrowPeak
  • 150tsv
  • 76bigBed narrowPeak
  • 39zippedFastqFolder
  • 22bed broadPeak
  • 22bigBed broadPeak
  • bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 455Homo sapiens
Biosample type
  • 338primary cell
  • 79cell line
  • 24in vitro differentiated cells
  • 15tissue
Organ
  • 917pancreas
  • 778liver
  • 657connective tissue
  • 485adipose tissue
  • 456epithelium
  • 363heart
  • 276kidney
  • 251brain
  • 223vasculature
  • 219blood vessel
  • 159bone element
  • 137artery
  • 86limb
  • 69blood
  • 69bodily fluid
  • 62musculature of body
  • 57eye
  • 41nerve
  • 34embryo
  • 24spleen
  • 20lung
  • 20vein
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 347AMP
  • 105HPAP
  • 4T1D
Genome assembly (visualization)
  • 296hg19
  • 275GRCh38
Lab
  • 345AMP-T2D consortium
  • 105Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 90inconsistent ontology term
  • 5audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

456 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
Hi-C
MeRIP-seq
RRBS
DNase-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell521335121
pancreatic beta cell211323121
pancreatic acinar cell489121
pancreatic ductal cell413410
endothelial cell of umbilical vein1721
epithelial cell of proximal tubule1101
pancreatic delta cell11
pancreatic polypeptide-secreting cell9
hepatocyte511
kidney epithelial cell151
choroid plexus epithelial cell31
retinal pigment epithelial cell31
brain microvascular endothelial cell3
endothelial cell2
enteroendocrine cell2
kidney glomerular epithelial cell11
kidney tubule cell11
renal cortical epithelial cell11
Liver fetal (hepatocyte)1
endothelial cell of coronary artery1
glomerular endothelial cell1
cell line
EndoC_BH13315191621
glomerular visceral epithelial cell11
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
pancreatic PP cell3
endothelial cell1
intermediate endothelial cell1
tissue
pigmented layer of retina212
renal glomerulus1
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