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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ATAC-seq
  • 64single cell RNA-seq
  • 60total RNA-seq
  • 52ChIP-seq
  • 6snATAC-seq
  • 4RRBS
  • 3DNase-seq
  • 3snDrop-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1FAIRE-seq
  • 1Hi-C
  • 1small RNA-seq
Assay category
  • 125Transcription
  • 85DNA accessibility
  • 52DNA binding
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 12control
  • 10transcription factor
  • 7recombinant protein
  • 3RNA binding protein
Date released
  • 130August, 2021
  • 47September, 2023
  • 30October, 2019
  • 23April, 2019
  • 14May, 2023
  • 11July, 2019
  • 8February, 2021
  • 5May, 2019
  • 3December, 2019
  • 3June, 2019
  • 2March, 2020
Available data
  • 183bed narrowPeak
  • 144bam
  • 131bigWig
  • 104bigBed narrowPeak
  • bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 62txt
  • 24tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 276Homo sapiens
Biosample type
  • 231tissue
  • 26primary cell
  • 19cell line
Organ
  • 917pancreas
  • 778liver
  • 657connective tissue
  • 503epithelium
  • 485adipose tissue
  • 363heart
  • 276kidney
  • 251brain
  • 223vasculature
  • 219blood vessel
  • 159bone element
  • 137artery
  • 86limb
  • 69blood
  • 69bodily fluid
  • 62musculature of body
  • 57eye
  • 41nerve
  • 34embryo
  • 24spleen
  • 20lung
  • 20vein
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 229AMP
  • 47KPMP
Genome assembly (visualization)
  • 127GRCh38
  • 58hg19
Lab
  • 142Katalin Susztak, Upenn
  • 85AMP-T2D consortium
  • 47KPMP
  • 2Bing Ren, UCSD
Audit category:
  • 22inconsistent ontology term
  • 7audit script error
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

276 results

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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
DNase-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney756449276111
metanephros11
kidney (Cortex-Medulla)1
kidney (cortex)1
kidney (medulla)1
primary cell
epithelial cell of proximal tubule1101
kidney epithelial cell151
kidney glomerular epithelial cell11
kidney tubule cell11
renal cortical epithelial cell11
cell line
RCC 7860 HIF1a re-expression14
RCC 7860 vector131
RCC 7860 HIF2a over-expression13
HEK293T2
glomerular visceral epithelial cell11
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