Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
9
Transcription
6
3D chromatin structure
6
DNA binding
6
DNA methylation
1
DNA accessibility
Target of assay
33
histone
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
10
July, 2019
7
August, 2017
5
March, 2020
2
February, 2020
2
June, 2019
1
January, 2018
1
May, 2019
1
May, 2022
Available data
43
bam
41
bigWig
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
txt
Organism
29
Homo sapiens
Biosample type
24
tissue
5
primary cell
Organ
778
pancreas
liver
579
connective tissue
453
adipose tissue
413
epithelium
266
heart
246
kidney
159
bone element
152
vasculature
149
blood vessel
117
artery
68
blood
68
bodily fluid
64
brain
54
eye
37
limb
29
musculature of body
24
embryo
20
lung
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
29
AMP
Genome assembly (visualization)
12
hg19
7
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bed3+
organ_slims!
liver
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
29 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
3
1
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
Download