Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
2
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
37
DNA binding
2
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
21
histone
21
histone modification
13
broad histone mark
10
control
8
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
19
October, 2019
8
November, 2018
7
December, 2018
7
January, 2019
2
March, 2020
1
October, 2017
Available data
62
bam
49
bigWig
45
bed narrowPeak
44
bigBed narrowPeak
24
fastq
23
bed broadPeak
23
bigBed broadPeak
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
44
Homo sapiens
Biosample type
24
tissue
20
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
ureter
Project
44
AMP
Genome assembly (visualization)
28
hg19
25
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
44 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
spleen
20
2
1
1
primary cell
endothelial cell of umbilical vein
17
2
1
Download