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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190total RNA-seq
  • 144ChIP-seq
  • 102ATAC-seq
  • 89single cell RNA-seq
  • 27pCHi-C
  • 11small RNA-seq
  • 9Hi-C
  • 4MeRIP-seq
  • 4snATAC-seq
  • 3DNase-seq
  • 3FAIRE-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 290Transcription
  • 144DNA binding
  • 112DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 118histone
  • 118histone modification
  • 82narrow histone mark
  • 36broad histone mark
  • 15transcription factor
  • 13control
  • 8RNA binding protein
  • 2nucleotide modification
Date released
  • 134May, 2021
  • 88May, 2020
  • 50October, 2019
  • 44February, 2023
  • 44July, 2018
  • 43August, 2021
  • 39April, 2018
  • 36July, 2019
  • 32March, 2020
  • 25February, 2020
  • 10February, 2021
  • 7June, 2019
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2January, 2021
  • 1April, 2019
  • 1August, 2017
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1May, 2022
  • 1November, 2018
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 483bam
  • 467bigWig
  • 302tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 589Homo sapiens
Biosample type
  • 295primary cell
  • 193tissue
  • 100in vitro differentiated cells
  • 1stem cell
Organ
  • 118pancreas
  • 76epithelium
  • 62brain
  • 39connective tissue
  • 18heart
  • 14kidney
  • 13adipose tissue
  • 9liver
  • 8bone element
  • 8musculature of body
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3limb
  • 2blood
  • 2bodily fluid
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1eye
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 447AMP
  • 138T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 436hg19
  • 366GRCh38
Lab
  • 417AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 50inconsistent ontology term
  • 3audit script error
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

589 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
small RNA-seq
Hi-C
MeRIP-seq
snATAC-seq
DNase-seq
FAIRE-seq
snDrop-seq
DNAme array
primary cell
monocyte264721
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans1021862421
brain61
liver2311
heart2111
pancreas11111
in vitro differentiated cells
neural progenitor cell72110
embryonic stem cell51141
cardiomyocytes12
induced pluripotent stem cell9
adipocyte13
stem cell
mesenchymal stem cell1
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