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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 559ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 20pCHi-C
  • 19RRBS
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 5Hi-C
  • 4DNase-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 559DNA binding
  • 102DNA accessibility
  • 57Transcription
  • 27DNA methylation
  • 53D chromatin structure
Target of assay
  • 387transcription factor
  • 118histone
  • 118histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 60broad histone mark
  • 58narrow histone mark
  • 55control
  • 32chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 71October, 2019
  • 62November, 2018
  • 56May, 2020
  • 44December, 2017
  • 31February, 2021
  • 28December, 2018
  • 23August, 2017
  • 23November, 2019
  • 21January, 2019
  • 20July, 2019
  • 18August, 2021
  • 16June, 2019
  • 16March, 2020
  • 14May, 2019
  • 14May, 2021
  • 7December, 2019
  • 7October, 2018
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 1April, 2019
  • 1July, 2018
Available data
  • 676bam
  • 611bigWig
  • 555bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 783Homo sapiens
Biosample type
  • 460cell line
  • 154primary cell
  • 110tissue
  • 59in vitro differentiated cells
Organ
  • 408liver
  • 76epithelium
  • 61pancreas
  • 56blood
  • 56bodily fluid
  • 36vasculature
  • 33blood vessel
  • 33kidney
  • 17brain
  • 17vein
  • 14heart
  • 13musculature of body
  • 8connective tissue
  • 8embryo
  • 7artery
  • 5limb
  • 3eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 754AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 628hg19
  • 543GRCh38
Lab
  • 739AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 80inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 28inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

783 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
RRBS
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
Hi-C
DNase-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
cell line
HepG2335151112
GM1287856
EndoC_BH122263
Panc111
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
skeletal muscle myoblast15112
endothelial cell of umbilical vein161
macrophage11
tissue
liver3611
islet of Langerhans1911
body of pancreas7
brain511
thoracic aorta7
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
hepatocyte15
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
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